#!/usr/bin/env esh if (args.size()<5) { print("syntax: "+efile(args[0]).basename()+" "); exit(-1); } modules.load("seqali"); t=&etree(); //t.load("gbrfseq-aligned-archaea-b142-e899.nonchimeric.sto.fasta.tree"); t.load(args[1]); t.setMidpointRoot(); //t.mergelog("gbrfseq-aligned-archaea-b142-e899.nonchimeric.sto2","gbrfseq-aligned-archaea-b142-e899.nonchimeric.sto.al",0.98); t.monophyly(args[2],args[3],args[4].f());