ACLOCAL_AMFLAGS=-I m4 SUBDIRS=$(subdirs) DIST_SUBDIRS=$(subdirs) AM_CXXFLAGS=-DDATAPATH='"$(datadir)/mapseq"' if !USE_SYSEUTILS LDADD=eutils/libeutils.la AM_CXXFLAGS+= -I$(srcdir)/eutils # AM_CXXFLAGS+= -Ilibs endif mapref-2.0.tar.gz : wget http://www.meringlab.org/software/mapseq/mapref-2.0.tar.gz data/mapref.fna : mapref-2.0.tar.gz tar -Cdata -xvzf mapref-2.0.tar.gz && mv data/mapref-2.0/* data/ && rmdir data/mapref-2.0 && touch data/mapref.fna #TESTS=tests/simple.sh mapref_files=data/mapref.fasta.ltps119tax data/mapref.fasta data/mapref.fasta.mscluster data/mapref.fasta.ncbitax data/mapref.fasta.otutax data/mapref.gold.fasta data/mapref.gold.fasta.tax #noinst_LIBRARIES=libmapseqali.a #libmapseqali_a_SOURCES=eseqali.h eseqali.cpp eseq.h eseq.cpp dist_man_MANS=man/mapseq.1 bin_PROGRAMS=mapseq #noinst_bin_PROGRAMS=kmerseqtables #bin_SCRIPTS=tree-convert-json.esh #LIBS=`eutils-config --libs || eutils/eutils-config --libs` EXTRA_PROGRAMS=kmerseqtables EXTRA_DIST=manual/mapseq-manual.tex manual/mapseq-manual.pdf data/make-transtable.sh data/prot_trans_table.h data/transl_table $(mapref_files) maprefdir = $(datadir)/mapseq mapref_DATA=$(mapref_files) # data/mapseqref.fa data/mapseqref.ncbitax data/mapseqref.otutax mapseq_SOURCES=mapseq.cpp eseqali.h ekmerhashmap.h ekmerhashmap_dec.h kmerseqtables-data.h eseqali.h eseqali.cpp eseq.h eseq.cpp #mapseq_LDADD=libmapseqali.a eutils/libeutils.la #mapseq_LDADD=eutils/libeutils.la #mapseq_DEPENDENCIES=kmerseqtables-data.h kmerseqtables_SOURCES=kmerseqtables.cpp #kmerseqtables_LDADD=eutils/libeutils.la #kmerseqtables_DEPENDENCIES=eutils/libeutils.la # needed to force make to make this file before making kmerfilter #BUILT_SOURCES=kmerseqtables-data.h kmerseqtables-data.h : ./kmerseqtables